Citations for 'Benchmarking ortholog identification methods using functional genomics data'

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Wednesday 08th of February 2012

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Cited: Benchmarking ortholog identification methods using functional genomics data

Identifying single copy orthologs in metazoa
IONS: Identification of orthologs by neighborhood and similarity-an automated method to identify orthologs in chromosomal regions of common evolutionary ancestry and its application to hemiascomycetous yeasts
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees
Positional orthology: Putting genomic evolutionary relationships into context
QuartetS: A fast and accurate algorithm for large-scale orthology detection
Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences
Testing the ortholog conjecture with comparative functional genomic data from mammals
Ortholist: A compendium of C. elegans genes with human orthologs
Evaluating ortholog prediction algorithms in a Yeast Model Clade
A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms
Different phylogenomic approaches to resolve the evolutionary relationships among model fish species
Computational analysis of LexA regulons in Cyanobacteria
The extinction dynamics of bacterial pseudogenes
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity
Identification of BERP (brain-expressed RING finger protein) as a p53 target gene that modulates seizure susceptibility through interacting with GABAA receptors
Dissecting spatio-temporal protein networks driving human heart development and related disorders
The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses
Getting started in gene orthology and functional analysis
FUNGIpath: A tool to assess fungal metabolic pathways predicted by orthology
Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse